Indraneel, Try something like:
pair_fit 1p80_A///79-130+160-180/CA, 1gwe_A///14-65+95-125/CA instead, where hypen (-) is used for matchd residue ranges, and plus (+) is used for the unmatched (gap) ranges. Cheers, Warren > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of > Indraneel Majumdar > Sent: Friday, June 15, 2007 2:27 PM > To: Warren DeLano > Cc: pymol-users@lists.sourceforge.net > Subject: [PyMOL] pymol pair_fit script size limit ? > > Hi, > > I am trying to run a pair_fit script: > > pair_fit \ > 1p80_A & i. 79 & n. ca, 1gwe_A & i. 12 & n. ca,\ 1p80_A & i. > 80 & n. ca, 1gwe_A & i. 13 & n. ca,\ 1p80_A & i. 81 & n. ca, 1gwe_A & > i. 14 & n. ca,\ ... > ... > > > I get this error: > Error: invalid arguments for pair_fit command. > > as soon as the script file is more than 50 lines (including the top > 'pair_fit \' line). This happened with three scripts, all gave the > same error. > > Does this affect all script files? > > Is there some other way to input the sequence, eg. cmd.___ ? > > Thanks, > Indraneel > > > > -------------------------------------------------------------- > ----------- > This SF.net email is sponsored by DB2 Express Download DB2 Express C - > the FREE version of DB2 express and take control of your XML. No > limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
