Tsjerk, Sometimes the archives can be misleading...
Actually, settings do now work on selections and bonds as well (with set_bond). However, only a small set of per-atom and per-bond settings are currently implemented, since each can require a significant amount of new code. Cheers, Warren > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > Of Tsjerk Wassenaar > Sent: Tuesday, June 26, 2007 9:26 PM > To: Dr. Mark Mayer > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] Sticks and distances with individual > transparencies > > Hi Mark, > > You could've found this one in the archives of this list. > Settings work on objects, not on selections. The solution is > to make an object for the solid sticks and one for the > transparent sticks, using create. > > Cheers, > > Tsjerk > > On 6/26/07, Dr. Mark Mayer <may...@mail.nih.gov> wrote: > > > > > > Dear All, > > > > > > I'm trying to write a Pymol script with which produces a mixture of > > both solid and transparent sticks I'm using the current 1.0 > incentive > > release of MacPymol. After drawing all my sticks I issue following > > commands, but nothing changes although the log output suggests the > > change is being set. > > > > > > PyMOL>set stick_transparency=0.2, /sca//A/228 and !mc > > Setting: stick_transparency set for 5 atoms in object "mol1". > > > > I'd also like to draw selected H-bonds with control of > transparency > > with the rest solid, but have no idea how to do this. > > > > > > -- > > Mark Mayer Ph.D. > > LCMN NICHD NIH DHHS > > Bldg 35, Room 3B 1002 MSC 3712 > > 35 Lincoln Drive > > Bethesda MD 20892 3712 > > Phone: 301-496-9346 (office); 301-496-9347 (lab); FAX > 301-496-2396 > > Lab web site: http://mayerlab.nichd.nih.gov > > > > Send packages, Fedex and anything requiring a signature to: > > > > Bldg 35, Room 3B 1004 > > 35 Lincoln Drive > > Bethesda MD 20892 > > > > > ---------------------------------------------------------------------- > > --- This SF.net email is sponsored by DB2 Express Download > DB2 Express > > C - the FREE version of DB2 express and take control of > your XML. No > > limits. Just data. Click to get it now. > > http://sourceforge.net/powerbar/db2/ > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > > > -- > Tsjerk A. Wassenaar, Ph.D. > Junior UD (post-doc) > Biomolecular NMR, Bijvoet Center > Utrecht University > Padualaan 8 > 3584 CH Utrecht > The Netherlands > P: +31-30-2539931 > F: +31-30-2537623 > > -------------------------------------------------------------- > ----------- > This SF.net email is sponsored by DB2 Express Download DB2 > Express C - the FREE version of DB2 express and take control > of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
