Is there an easy way to refer to/select a portion of a molecular surface that is within a given distance of another molecule's surface? I'm trying to generate some graphics for a presentation on a signaling pathway, and I want to show just the part of each peptide's solvent accessible surface that is making contact with the binding site. Ideally, I would like to be able to color this, at least in a contrasting color to the structures of the components, but preferably tied to electrostatic potential or hydrophobicity. Has anyone ever done this, and if so, can you spare any advice?

Thanks,
     Andy



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