AFAIK setting connect_mode=1 strictly uses the CONECT records from pdb file to draw bonds.
Cheers, Abhi. On 9/6/07, Mark A Saper <sa...@umich.edu> wrote: > > This was previously discussed in an archived email but I can't find it > right now. Does the setting connect_mode=0 use the CONECT records in the > PDB file or not? I think it does. Apparently in pdb code 1ABE, the CONECT > records were changed in a 2005 revision. Two alternate sugar conformations > are now interconnected when using the current 1ABE. The old 1ABE (from > 1993) seems fine. > > Should setting connect_mode to 0 before loading PDB fix it? I don't think > it does. > > > Thanks, > Mark > > _________________________________ > > *Mark A. Saper, Ph.D.* > > Associate Professor of Biological Chemistry > > Biophysics, University of Michigan > > 930 N University Ave > > Ann Arbor MI 48109-1055 U.S.A. > > > sa...@umich.edu (734) 764-3353 fax (734) 764-3323 > > http://www.biochem.med.umich.edu/biochem/research/profiles/saper.html > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > >
