Lorraine,
Have you upgraded a fink 10.3 installation to 10.4? My
experience is that this process has a lot of rough edges
and that you are far better off to move aside your /sw
directory and reinstall the current fink in that case.
Jack
----- Original Message -----
From: William Scott <[email protected]>
Date: Wednesday, September 19, 2007 10:37 am
Subject: Re: [PyMOL] How do I handle pmw virtual package for pymol 1.0
on Mac OS 10.4.10?
To: Lorraine Cavanaugh <[email protected]>
Cc: [email protected], [email protected]
>
> Hi Lorraine:
>
> All of the python packages in fink have suffixes that correspond to
> version numbers, so if you wanted to use pymol with the most
> current
> python, you should issue
>
> fink selfupdate; fink update-all; fink install pymol-py25
>
> I would have thought that would automatically ensure you have
> python25
> and pmw-25 installed.
>
> I'm a bit suprised that you list pmw-py22 as one of the options, as
> it
> does not exist in the current 10.4 branch of fink. The only thing I
> can
> think of is that you aren't using the current 10.4 branch of fink, but
> are still running the 10.3 branch of fink or the 10.4-transitional
> branchthat was phased out a year ago.
>
> Anyway, you need to install the pmw verstion that corresponds to
> the pymol
> version.
>
> I've cc-ed the maintainer in case he has any insights. I thought
> installing pymol would have forced you to install the right version
> of
> pmw.
>
> Bill
>
> On Tue, 18 Sep 2007, Lorraine Cavanaugh wrote:
>
> Hi Everyone,
>
> I have been successfully using pymol 0.99 (open source
> version) on my Mac
> (dual G5) for a while now and am trying to upgrade to version
> 1.0.
> I can install and compile the program under the Fink
> environment. When I
> try to run the program I get an error message that basically
> says that the
> program can't find pmw.
>
> Now, I realize that this is a dependency- so I checked with
> fink to see what
> was installed EXACTLY (since I thought it was installed already).
>
> What is specifically installed is:
> Pmw-py22
> Pmw-py23
> Pmw-py24
>
> And Fink says that pmw is installed, but it is a virtual
> package, where the
> previously mentioned packages are actually the ones that
> provide the
> widgets.
>
> What's the best way to work around this? How can I get the
> old pmw package
> under fink?
>
> Thanks in advance,
> Lorraine
> --
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Lorraine Cavanaugh, Ph. D.
> Postdoctoral Research Associate
> Hunt Lab
> Department of Biological Sciences
> Columbia University
> New York, NY
>
>
> <[email protected]>
> <[email protected]>
> <[email protected]>
>
>
>
>
>
>
>
>
> ------------------------------
>
>
