Bonetti Cosimo schrieb: > Hi there, > I used Pymol as a refined viewer since now, and I manage to do pretty > much everything. > But now the thesis and publications required more advanced pictures. > I would like to to ask how to open 2 pse files in the same window pse files are the sessionfiles from pymol. If you have saved the two setups of our protein in different files you coulnd't load them at the same time, because they will over write the whole settings of the other. Solution: Write everything in an log files and load this one. For example:
log_open LOG_file.pml load Protein_A, first_prot load Protein_B, second_prot hide show cartoon, all color red, first_prot color blue, second_prot log_close Now everything you did is in the log file.If you want to reload it again just type @LOG_file.pml. > moreover I would like to align more then two proteins having as common > orientation the chromophore that they bind. I tried with > align prot1.pse////CA, prot2.pse, FMN=alignment > but it does not work. Better use the CEalign plugin. You can find a good description for usage and installation in the wiki. > > could somebody help me? > > thanks > > Cosimo > > -- > Mr. Cosimo Bonetti > Section of Biophysics > Vrije Universiteit Amsterdam > De Boelelaan 1081 > 1081 HV, Amsterdam – The Netherlands > Room: S1.48 > Phone: +31(0)20 598 7932 > Fax : +31 (0)20 598 7999 > E-mail : cbone...@nat.vu.nl <mailto:cbone...@nat.vu.nl> > cosimobone...@gmail.com <mailto:cosimobone...@gmail.com> > > > ============================= > Float like a > butterfly > Sting like a > bee! > [Muhammad Ali] > ================================= > work hard, play harder, sleep later > winners do not think about the finish line > they just love to run > ======================== > > "To make a bad day worse, spend it wishing for the impossible." > > "I don't know which is worse, ...that everyone has his price, or that > the price is always so low." > -Calvin > ============================= > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2005. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > ------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
