Gary,

Sorry to hear you couldn't get CE to work for you.  If you have time, please 
email me (personally or via the PyMOLWiki) and let me know what frustrations 
you had.  I'd like to make it more user friendly.

To quickly answer your question about visualizing the true-CE results use 
split_states:

  # (1) load the CE result file
  load /path/to/ceResults.txt

  # (2) call split_states to show the other molecule
  split_states ceResults

HTH,

-- Jason

-- 

Jason Vertrees, PhD (javer...@{utmb,cs.dartmouth}.edu)

http://www.best.utmb.edu/
http://www.pymolwiki.org/

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