Andreas,

Thanks for compiling & testing the current open-source code!  I think this
is a driver issue.  Some card/driver combinations object to being fed
geometry too fast in immediate mode.  Please See if one or both of the
following settings helps:

set ati_bugs
set nvidia_bugs

Also, try:

set use_display_lists

Cheers,
Warren

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DeLano Scientific LLC
Subscriber Support Services
mailto:[email protected]
________________________________

From: [email protected]
[mailto:[email protected]] On Behalf Of Andreas
Forster
Sent: Saturday, May 31, 2008 3:32 AM
To: PYMOLBB
Subject: [PyMOL] exploding proteins


Dear all,

I just checked out PyMOL 1.1r0 revision 3367 via subversion.  When I open
any old pdb file (eg. fetch 1ubq), the protein is displayed as if irradiated
with a free-electron laser
(https://fileexchange.imperial.ac.uk/files/5b706c5efa/lines.png).  The
cartoon (https://fileexchange.imperial.ac.uk/files/0dd1d6af73/cartoon.png)
or any other representation is fine, except ribbon, which displays nothing.

Is that a bug in PyMOL or in my graphics driver?  I'm running Fedora 7 with
the current ATI driver obtained from the livna repository.  The graphics
card is a dusty FireGL T2.

Thanks.


Andreas



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