Siddharth, align obj1////CA, obj2////CA, cycles=0
Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:supp...@delsci.com -----Original Message----- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of siddha...@iitg.ernet.in Sent: Wednesday, June 04, 2008 3:15 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] RMSD Calculations Hi everyone, I needed to know how to calculate the RMSD for 2 homologous structures over the entire structure (For C-alpha atoms). Currently, PyMol performs sequence alignment and then gives the RMSD values for only those regions which are matching. But, as I mentioned before, I need RMSD values for the whole molecule. Any help would be greatly appreciated. Thanks a lot Siddharth Gupta Indian Institute of Technology, Guwahati ---------------------------------------------------------------------------- ------- This email was sent from IIT Guwahati Webmail. If you are not the intended recipient, please contact the sender by email and delete all copies; your cooperation in this regard is appreciated. http://www.iitg.ac.in ------------------------------------------------------------------------- Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/services/buy/index.php _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
