Dear PyMol Users, We're using Pymol to automatically extract all the backbone dihedrals from a protein.
I've noticed that it's very slow doing those calculations. Normally in Fortran it will take some seconds, while in pymol it takes five minutes or even more. The command we issue is : $> /opt/soft/pymol/pymol -qc dihedral.py That dihedral.py script only reads some pdb's and and uses the function get_dihedral() Does anybody know why is it running so slow ? And if so, is it possible to speed it up in any way ? Thanks Best Regards, David McGiven.
