Dimitry, Try the following:
set seq_view, on super mol1, mol2, object=alignment This shows CGO lines between the paired atoms on the structures, and also aligns the sequences (where the grey letters are non-matching). HTH, -- Jason > Message: 8 > Date: Fri, 22 Aug 2008 14:40:19 +0400 > From: DimitryASuplatov <gene...@gmail.com> > Subject: Re: [PyMOL] Sequence alignment editing > To: pymol-users@lists.sourceforge.net > Message-ID: <1219401619.4956.12.ca...@leiden.genebee.msu.ru> > Content-Type: text/plain > > Hello, > I have two structures of related organisms. I want to align them in 3D > with pymol and be able to view their sequences aligned as well > (corresponding to structure alignment). Right now when using > Display->Sequence mode sequences are displayed simply 'as is' even after > 3D 'align' command. Could something be done? Thanks. > Thanks! > SDA. -- Jason Vertrees, PhD Dartmouth College : j...@cs.dartmouth.edu Boston University : jas...@bu.edu PyMOLWiki : http://www.pymolwiki.org/
