You can save the "alignment" object resulting from an align command to an
aln file:

align sele1, sele2, object=aln_obj

save alignment.aln, aln_obj

Cheers.
Thomas
On Sun, Sep 28, 2008 at 21:14, Praveen Madala <[email protected]> wrote:
> Hi,
> Can I able to save sequence alignment got ...... after performing the
> structural alignment of two proteins.
>
> Regards,
> Praveen K Madala
> Group - Fairlie
> Institute For Molecular Biosciences
> The University of Queensland,Brisbane
> QLD-4120, AUSTRALIA
> Ph: +61-7-33462987
>
>
>
>
>
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