Am Freitag 07 November 2008 12:10:19 schrieb DimitryASuplatov:
> Hello,
> does pymol supports gromacs coordinate and trajectory files (gro, xtc,
> tpr, trr etc.)?
> Thanks
Trajectory support is supported when vmd plugins are enabled during build.
Here's a small function I use with pymol to load gro files:
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def gro( fnm ):
tmpfile=tempfile.mktemp(".pdb")
os.system("editconf -f %s -o %s" % (fnm,tmpfile) )
cmd.load(tmpfile, fnm[:-4] )
os.remove(tempfile)
cmd.extend( "gro", gro )
-----------------------
Best
Martin
--
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Dipl.Phys. Martin Hoefling
Chair for Applied Physics
Ludwig-Maximilians-University
Amalienstr. 54
80799 Munich
Phone: +49-89-2180-3436
Fax: +49-89-2180-2050
http://www.biophysik.physik.uni-muenchen.de
http://www.gottschalklab.org/hoefling_martin.html
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