Hi,

I try to write a script able to reorient a protein and to save (in a pdb 
format) the reoriented structure.
I have a problem during the saving phase of my script.

When I use the update function some atoms are not tacken into account. 
Typically, if several atoms have the same name (for example HB of a sidechain) 
only the first one is updated. This leads to a final wrote structure with a 
series of atoms badly positionned.

Do you have any idea to solve this problem ?

Thank you for your help

S. Conilleau

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