Martin, -r is for running Python programs in the __main__ namespace.
For PyMOL command scripts, simply: pymol doit.pml Cheers, Warren > -----Original Message----- > From: Martin Höfling [mailto:martin.hoefl...@gmx.de] > Sent: Friday, February 20, 2009 8:50 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] running script on startup > > Hey folks, > > I am trying to fire up a script with pymol -r doit.pml > > PyMOL>run doit.pml,main > Traceback (most recent call last): > File "/sw/lib/pymol-py25/modules/pymol/parser.py", line 334, in parse > > parsing > .run_file(exp_path(layer.args[0]),__main__.__dict__,__main__.__dict__) > File "/sw/lib/pymol-py25/modules/pymol/parsing.py", line 455, in > run_file > execfile(file,global_ns,local_ns) > File "doit.pml", line 2 > select resname SOL > ^ > SyntaxError: invalid syntax > > Can't I use these commands or any ideas what I am doing wrong there? :-) > > Best > Martin > > -------------------------------------------------------------------------- > ---- > Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, > CA > -OSBC tackles the biggest issue in open source: Open Sourcing the > Enterprise > -Strategies to boost innovation and cut costs with open source > participation > -Receive a $600 discount off the registration fee with the source code: > SFAD > http://p.sf.net/sfu/XcvMzF8H > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > >
