Hi Jason, thanks for the hint. That works just fine.
nick On Mon, Dec 14, 2009 at 11:12, Jason Vertrees <[email protected]>wrote: > Nick, > > Interesting question. My best guess at this point is that PyMOL can't > do what you want. You can load the XYZ file into multiple distinct > objects: > > load myXYZ.xyz, multiplex=1 > > and each object will be shown with proper bonding. However, the > moment you try to combine those into one structure they retain the > bonding topology of the first structure. If you change any > intermediate state, then they all change. > > Anyone else? > > -- Jason > > -- > Jason Vertrees, PhD > > PyMOLWiki -- http://www.pymolwiki.org > > > > On Mon, Dec 14, 2009 at 11:30 AM, Nicolas Bock <[email protected]> > wrote: > > Hello list, > > > > I have a bunch of xyz files that are along a transition path in a > molecule. > > When I load all of them into pymol and step through the individual > frames, > > pymol calculates the bonds only for the initial frame. This leads to > wrong > > bonding in subsequent frames since some atoms move quite a bit during the > > transition. How can I get "dynamic" bonding so that bonding is > recalculated > > for each frame? > > > > nick > > > > > > > ------------------------------------------------------------------------------ > > Return on Information: > > Google Enterprise Search pays you back > > Get the facts. > > http://p.sf.net/sfu/google-dev2dev > > > > _______________________________________________ > > PyMOL-users mailing list ([email protected]) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/[email protected] > > >
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