I've been using the pymol2 interface to run pymol inside Qt widgets. There 
doesn't seem to be any documentation for it, but once you figure it out it 
seems to work well.

On Dec 21, 2010, at 12:27 AM, Jason Vertrees wrote:

> Hi Mike,
> 
> It's possible, but at this point would be more trouble than it's
> worth.  The newer pymol2 methods are not yet stable enough for
> mainstream use.  The older pymol1 methods will leave you struggling
> with synchronization and other problems.
> 
> Cheers,
> 
> -- Jason
> 
> On Fri, Dec 17, 2010 at 11:56 PM, Mike Turchenkov <mcla...@gmail.com> wrote:
>> Hello, dear All.
>> 
>> Is it possible to use PyMOL as a whole in other python apps? I use
>> tkinter for some comfort automation and I wolud like to integrate
>> interactive visualiser windows into my app. Is it possible, or it just
>> doesn't work that way?
>> 
>> Thanks.


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