Hi Nick, This is something Robert Campbell alluded to a few days ago. To get what you want, the "python block" and "mdo" are you friends:
# create an ala fragment and setup the view frag ala as sticks orient # 60-frame movie mset 1x60 # start a Python block that fades out the fragment python for x in range(60): cmd.mdo(x, "set_bond stick_transparency, %f, ala" % (x/60.)) python end # play the movie mplay See: * -- http://www.pymolwiki.org/index.php/Mdo * -- http://www.pymolwiki.org/index.php/Python Cheers, -- Jason On Fri, May 20, 2011 at 12:54 PM, Nicolas Bock <nicolasb...@gmail.com> wrote: > When I do the following > > hide all > show sticks, all > scene 001, store > > set_bond stick_transparency, 0.5, all > scene 002, store > > scene 001 > > the stick_transparency setting is not restored. I was hoping I could use > scenes to slowly fade out a part of a molecule by adding several scenes > with increasing stick_transparency values. > > Thanks, nick > > > ------------------------------------------------------------------------------ > What Every C/C++ and Fortran developer Should Know! > Read this article and learn how Intel has extended the reach of its > next-generation tools to help Windows* and Linux* C/C++ and Fortran > developers boost performance applications - including clusters. > http://p.sf.net/sfu/intel-dev2devmay > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ What Every C/C++ and Fortran developer Should Know! Read this article and learn how Intel has extended the reach of its next-generation tools to help Windows* and Linux* C/C++ and Fortran developers boost performance applications - including clusters. http://p.sf.net/sfu/intel-dev2devmay _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
