Hi folks/Jason,
I have been playing with PyMOL again lately for teaching and have noticed that
when you run the menu command Action>preset>ligand site >cartoon which looks
great... if there are any H-bonds with a protein chain amide carbonyl, then the
carbonyl is not displayed. If you use "Show>lines or sticks" this does not then
show them. I'm sure there is a background (python) setting to adjust this but
is it possible to include the carbonyl's in question with the initial preset?
HIV protease is a good example to show this.
Cheers
Joel
_________________________________
Joel Tyndall, PhD
Senior Lecturer in Medicinal Chemistry
National School of Pharmacy
University of Otago
PO Box 56 Dunedin 9054
New Zealand
Skype: jtyndall
http://www.researcherid.com/rid/C-2803-2008
Pukeka Matua
Te Kura Taiwhanga Putaiao
Te Whare Wananga o Otago
Pouaka Poutapeta 56 Otepoti 9054
Aotearoa
Ph / Waea +64 3 4797293
Fax / Waeawhakaahua +64 3 4797034
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