Hi Bjoern, Please do also give a more explicit account of what you want to achieve in the end and what you've tried to get there, including the commands used.
Cheers, Tsjerk 2011/8/25 Troels Emtekær Linnet <tlin...@gmail.com>: > Check this, and tell if it works. > > http://pymolwiki.org/index.php/Matrix_Copy > > Troels Emtekær Linnet > Karl-Liebknecht-Straße 53, 2 RE > 04107 Leipzig, Tyskland > Mobil: +49 1577-8944752 > > > 2011/8/25 Bjoern-oliver Gohlke > <bjoern-oliver.goh...@student.uni-tuebingen.de> >> >> The error I get is from the following command: >> super 1A9U, mesh >> ExecutiveAlign: invalid selections for alignment. >> >> I think that the problem is that I try to align the mesh points with an >> protein. >> In my understanding, I need this one to run the get_object matrix command. >> Or do I understand something in the wrong manner?? >> >> >> Zitat von Troels Emtekær Linnet <tlin...@gmail.com>: >> >>> Can you provide the error message? >>> >>> >>> >>> 2011/8/25 Bjoern-oliver Gohlke < >>> bjoern-oliver.goh...@student.uni-tuebingen.de> >>> >>>> Hi, >>>> >>>> I actual try to get the coordinates of the mesh from a >>>> protein/selection. >>>> >>>> At first I run the following command: >>>> open("pymol.mesh","w").write( cmd.get_povray()[1] ) >>>> >>>> There I get points shifted by one axis or something like that. >>>> Then somebody here from the mailinglist tells me that I have to use >>>> cmd.get_object_matrix. >>>> I read in the Wiki how to use this command. >>>> (http://www.pymolwiki.org/index.php/Get_object_matrix) >>>> But when I try to run the example with my points and the protein I >>>> always get an error. >>>> Can sombody help me, or tell me what I do wrong?? >>>> >>>> Thanks in advance, >>>> Björn >>>> >>>> >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> EMC VNX: the world's simplest storage, starting under $10K >>>> The only unified storage solution that offers unified management >>>> Up to 160% more powerful than alternatives and 25% more efficient. >>>> Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev >>>> _______________________________________________ >>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >> > > > ------------------------------------------------------------------------------ > EMC VNX: the world's simplest storage, starting under $10K > The only unified storage solution that offers unified management > Up to 160% more powerful than alternatives and 25% more efficient. > Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ EMC VNX: the world's simplest storage, starting under $10K The only unified storage solution that offers unified management Up to 160% more powerful than alternatives and 25% more efficient. Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
