Hi Andrew, On Thu, Aug 25, 2011 at 8:51 AM, Malaby, Andrew <andrew.mal...@umassmed.edu> wrote: > I am working on a figure showing the sticks of one molecule interacting with > the surface of another. I am trying to keep my normal coloring in a figure, > but make background portions of the molecule lighter. I have tried "set fog" > followed by chain and residue numbers, to no avail. The program responds, > but no visible change occurs. I feel that I am missing something inherent in > the program. Any help here would be greatly appreciated.
The fog setting is really a numerical parameter in an equation---not just on and off. So try, set fog, 5 set fog, 10 Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ EMC VNX: the world's simplest storage, starting under $10K The only unified storage solution that offers unified management Up to 160% more powerful than alternatives and 25% more efficient. Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
