Well, I cant get it to work.
Pymol speeds ahead of calling propka.propka
Can you give an example of subprocess?
---------------------------
import propka
python
resis = [["1bj6","36"],["1bj6","39"]]
#resis =
[["1bj6","36"],["1bj6","39"],["1bj6","49"],["1ag1","14"],["1gu9","133"],["1gu9","130"],["1omu","56"],["1khg","273"],["2trx","35"],
#["1tde","32"],["1tde","35"],["2ovo","56"],["1m8b","56"],["1hic","39"],["1m8c","56"]]
i = 0
for resi in resis:
cmd.fetch(resi[0],async="0")
cmd.refresh()
# When we import a module in python, the namespace is normally:
module.function
# And we see, that propka expect resi to be in "str" format.
# And we don't want the logtime function
propka.propka(molecule=resi[0],resi=resi[1],logtime=i)
cmd.refresh()
i = i + 1
python end
zoom all
hth
> Martin
>
>
> On 23.08.11 10:48, Troels Emtekær Linnet wrote:
>
> Hi.
>
> If one writes a pymol script, and calls an external function, the pymol
> script continues its operation before waiting for the "success" of the
> external function.
>
> Is it possible to give a keyword, so it "waits" for the external function
> before preceding?
>
> Kind of the same function with:
> fetch 1hp1, async=0
>
> Best
> Troels
>
>
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