Dear Suda,
cealign can be used to do structure based superposition
PyMOL> cealign target, mobile
However, it's a pair-wise based alignment. You have to align two 
structures each time.
Hope this helps.

Zhijian Xu

Suda Ravindran wrote:
> Hi,
>
> I would like to know how to do structure based superposition using 
> PyMol for 3 or more structures. Please help me out.
>
> Thanks,
>
> -Suda
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EMC VNX: the world's simplest storage, starting under $10K
The only unified storage solution that offers unified management 
Up to 160% more powerful than alternatives and 25% more efficient. 
Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev
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