On Sun, Sep 4, 2011 at 8:37 PM, niloofar niknam <niloofae_nik...@yahoo.com> wrote: > > > Deal list, > I would like to calculate partial charges of my pdb. Is it possible to do it
In pymol: Action-> compute -> partial charge sum > by Pymol? If not, Is anyone know any server > or software to do it? > I have another question too, when aligning two structure in Pymol, there is > a RMSD for the total structure, is there any command to calculate the RMSD > for a specific region of the alignment. > Any offer would be appreciated. > kind regards. > Niloofar > > ------------------------------------------------------------------------------ > Special Offer -- Download ArcSight Logger for FREE! > Finally, a world-class log management solution at an even better > price-free! And you'll get a free "Love Thy Logs" t-shirt when you > download Logger. Secure your free ArcSight Logger TODAY! > http://p.sf.net/sfu/arcsisghtdev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Best Regards, lina ------------------------------------------------------------------------------ Special Offer -- Download ArcSight Logger for FREE! Finally, a world-class log management solution at an even better price-free! And you'll get a free "Love Thy Logs" t-shirt when you download Logger. Secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsisghtdev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
