So.
cmd.(something) ALWAYS has to be in string format.
So there is the cmd.frame wrong.
Then you dont quit the mutagenesis wizard....
And you have a space in the cmd.save
*It total, try:*
#Initialize
fetch 1shr, async=0
create test, 1shr
cmd.wizard("mutagenesis")
cmd.do("refresh_wizard")
# Mutate
cmd.get_wizard().set_mode("HIS")
cmd.get_wizard().do_select("/test//B/36")
cmd.frame("1")
cmd.get_wizard().apply()
cmd.set_wizard("done")
# Save
cmd.save("kill.pdb")
or look at:
http://www.pymolwiki.org/index.php/Rotkit
import rotkit
*mutate test, chain=B, resi=36, target=HIS, mutframe=1*
2011/9/2 Rozaimi Razali <rozaimiraz...@gmail.com>
> Can someone please explain to me why my script is not working properly?
>
> #Initialize
> fetch 1shr, async=0
> create test, 1shr
> cmd.wizard("mutagenesis")
> cmd.do("refresh_wizard")
>
> # Mutate
> cmd.get_wizard().set_mode("HIS")
> cmd.get_wizard().do_select("/test//B/36")
>
> cmd.frame(1)
> cmd.get_wizard().apply()
>
> # Save
> cmd.save ("kill.pdb")
>
> Thanks!
>
>
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price-free! And you'll get a free "Love Thy Logs" t-shirt when you
download Logger. Secure your free ArcSight Logger TODAY!
http://p.sf.net/sfu/arcsisghtdev2dev
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