Another approach would be appending to sys.path, and loading the scripts with import instead of run.
Arne Dieckmann wrote: > That is a hot tip. However, can I also specify some path that would tell > pymol the location of my scripts? I have a number of scripts that I need to > call while already in Pymol and I do not want to type in the complete path > every time. Also, copying these scripts to the current working directory is > not a really good solution. > > > Cheers, > Arne > > > > On Sep 19, 2011, at 12:48 AM, Thomas Holder wrote: > >> Hi Lina, >> >> you can put a .pymolrc file in your home directory, it's a script that >> PyMOL will read on each startup. You can have it either in PyMOL syntax >> or as a python script, depending on the file extension. >> >> /home/lina/.pymolrc (in PyMOL syntax) >> /home/lina/.pymolrc.py (in python syntax) >> >> http://www.pymolwiki.org/index.php/Pymolrc >> >> Then create a directory -- lets say /home/lina/.pymol -- and put the >> PyMOLWiki scripts there. And in your .pymolrc you put lines like these >> (PyMOL syntax): >> >> run /home/lina/.pymol/Grepsel.py >> run /home/lina/.pymol/Polarpairs.py >> run /home/lina/.pymol/Propka.py >> ... and so on >> >> Cheers, >> Thomas >> >> lina wrote, On 09/19/11 07:10: >>> Hi, >>> >>> Just a quick Q: >>> >>> How can I better organize those *.py I mainly obtained from pymol wiki, >>> not those can be installed by the plugins, >>> >>> pymol run in different directory each time. >>> >>> Thanks, >>> >>> -- >>> Best Regards, >>> >>> lina >> -- >> Thomas Holder >> MPI for Developmental Biology >> Spemannstr. 35 >> D-72076 Tübingen >> >> ------------------------------------------------------------------------------ >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> Learn about the latest advances in developing for the >> BlackBerry® mobile platform with sessions, labs & more. >> See new tools and technologies. Register for BlackBerry® DevCon today! >> http://p.sf.net/sfu/rim-devcon-copy1 >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2dcopy1 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
