Hi Hena, you don't need to edit the script. If you paste the script to a file named script.py, then you can continue by typing into the PyMOL command line:
run script.py angle_between_helices chain A and resi 6-20, chain A and resi 26-39 Cheers, Thomas Hena Dutta wrote, On 11/22/11 20:50: > Hi, > > Can anyone guide me how to use the pymol script to calculate the angle > between two helices? > Where and how to edit the script? I have 2 helices in a pdb file as follows: > > protein.pdb > hel1 is chain A: 6-20 > hel2 is chain A: 26-39 > > Thanking you in advance... > Hena -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
