If you are in the PyMOL Viewer and in Edit mode, you can hit
<ALT>+<{a,g,d,e,...}> to build up a linear polypeptide, where the single
letters correspond to the amino acide identifiers.
Is this useful to you?
Am 23.11.11 11:43, schrieb James Starlight:
Dear PyMol Users!
I wounder to know about possible ways of creation of the peptide
structures via PyMol Builder module. In particular I need create a
linear structure of my protein ( with fixed phi and psi angles) for
futher folding molecular dynamics simulation of that peptide. But in
builder module I found only helix and sheet conformations for each aa.
residue. How I can specify desired values for both torsion angles ?
Also I'd like to know is there any module for pymol wich could be used
for obtaining linear unfolded structure for the defined sequence or
folded protein ( in pdb) ?
Thanks,
James
------------------------------------------------------------------------------
All the data continuously generated in your IT infrastructure
contains a definitive record of customers, application performance,
security threats, fraudulent activity, and more. Splunk takes this
data and makes sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-novd2d
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
------------------------------------------------------------------------------
All the data continuously generated in your IT infrastructure
contains a definitive record of customers, application performance,
security threats, fraudulent activity, and more. Splunk takes this
data and makes sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-novd2d
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
