Tsjerk,
You are correct that the PSF file only has that information.  I should have 
mentioned that I plan to load a simulation trajectory file (DCD) into this 
PSF/PyMOL object.
Thanks
Sean

Date: Wed, 7 Dec 2011 18:28:28 +0100
Subject: Re: [PyMOL] Reading Protein Structure File (PSF)
From: [email protected]
To: [email protected]
CC: [email protected]

Hi Sean,
The .psf file format is for a topological desription (bonds, angles, etc), not 
for coordinates afaik.
Cheers,
Tsjerk
On Dec 7, 2011 6:25 PM, "Sean Law" <[email protected]> wrote:






Hi PyMOLers,
Can anybody tell me if there's a way to read in a protein structure file (PSF). 
 This is a common file format in simulation programs such as CHARMM and NAMD 
and basically gives similar information to the PDB file.

Any suggestions would be greatly appreciated.
Thank you for your time.
Sean                                      

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This white paper is intended to serve as a reference, checklist and point of 
discussion for anyone considering optimizing the pricing and packaging model 
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