Hi Vasan,
I think we just fixed this bug a few days ago. If so, I'll push the
changes and send you the file you need. At this point, if you already
have your map back you can issue the "isosurface" command
(http://www.pymolwiki.org/index.php/Isosurface) against the map.
Cheers,
-- Jason
On Sun, Dec 11, 2011 at 1:55 PM, Srinivasan Rengachari
<srinivasan.rengach...@yahoo.com> wrote:
> Hi Pymol Users,
>
> I recently updated my ubuntu and ran my APBS tools 2.1 plugin and
> got the following error when i tried to visualize on surface mode. Kindly
> help me on how to solve this issue...
>
> Error: 1
> <type 'exceptions.TypeError'> Exception in Tk callback
> Function: <bound method VisualizationGroup.updateMolSurface of
> <pmg_tk.startup.apbsplugin.VisualizationGroup instance at 0xacd77ac>> (type:
> <type 'instancemethod'>)
> Args: ()
> Traceback (innermost last):
> File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line
> 1747, in __call__
> return apply(self.func, args)
> File "/usr/lib/pymodules/python2.7/pmg_tk/startup/apbsplugin.py", line
> 2399, in updateMolSurface
> self.updateRamp()
> File "/usr/lib/pymodules/python2.7/pmg_tk/startup/apbsplugin.py", line
> 2396, in updateRamp
> pymol.cmd.set('surface_color',ramp_name,molecule_name)
> File "/usr/lib/pymodules/python2.7/pymol/setting.py", line 999, in set
> type = _cmd.get_setting_tuple(_self._COb,int(index),str(""),int(-1))[0]
> <type 'exceptions.TypeError'>: 'NoneType' object is not subscriptable
>
> Many thanks,
> Vasan
>
> ------------------------------------------------------------------------------
> Learn Windows Azure Live! Tuesday, Dec 13, 2011
> Microsoft is holding a special Learn Windows Azure training event for
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> _______________________________________________
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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