Hi Teddy, it's "CONECT" with only 1 "N". The big bond length is no problem for pymol. Check this simple example:
pseudoatom mol, name=A, pos=(0,0,0) pseudoatom mol, name=B, pos=(10,0,0) bond name A, name B save /tmp/mol.pdb The written file has HETATM and CONECT records and loads fine in PyMOL again. Cheers, Thomas Shaoqing Zhang wrote, On 12/21/11 21:29: > I want to build a geometric model with HETATM as general particles, and > put CONNECT information to show the bonds between the particles. But the > bond length is very big comparing with those of the usual chemical > bonds. The bonds do not show up in pymol. How to solve this problem? > Thank you very much. > > Teddy -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Write once. Port to many. Get the SDK and tools to simplify cross-platform app development. Create new or port existing apps to sell to consumers worldwide. Explore the Intel AppUpSM program developer opportunity. appdeveloper.intel.com/join http://p.sf.net/sfu/intel-appdev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
