Dear Mr. Thomas Holder ,
Thanks for the reply .According to you the plugin has been installed
properly.Can you briefly mention
1.how to define the reference object for using super command
2.how to use super command with multiple structures to align with the
suitable example.
I have started using pymol recently so it will be worth working for me.
Pavan Payghan
On Tue, Dec 27, 2011 at 5:41 PM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> Hi Pavan,
>
>
> I want to install the plugins like super_all.py, align_all_to_all.py
>> ,build_seq.py etc in the PyMol version +v0.97 but I am unable to do so.
>> As I mentioned earlier also , even after getting the success message of
>> plugin has been installed, please restart PyMol to begin use failed to use
>> the commands .
>> I got following error message - AttributeError: 'NoneType' object has no
>> attribute 'lower( for super_all.py ).
>>
>
> Provide the name of the reference object as first argument. All other
> arguments have default values.
>
>
> Also i want to know whether installing the plugin will add them to be
>> displayed in plugin list compulsorily for the above mentioned or all the
>> plugins.
>>
>
> The above mentioned scripts do not add plugin menu items, they only
> provide new commands.
>
> Cheers,
> Thomas
>
> Pavan Payghan
>>
>>
>> On Tue, Dec 27, 2011 at 2:17 AM, Jacob Keller <
>> j-keller2@fsm.northwestern.**edu <j-kell...@fsm.northwestern.edu><mailto:
>> j-keller2@fsm.**northwestern.edu <j-kell...@fsm.northwestern.edu>>>
>> wrote:
>>
>> You can try the "alignto" command as an alternative, if you want.
>>
>> JPK
>>
>> On Mon, Dec 26, 2011 at 12:45 PM, PAVAN PAYGHAN <pavana...@gmail.com
>> <mailto:pavana...@gmail.com>> wrote:
>> > Dear PyMol Users,
>> >
>> > I am using PyMol +v0.97 version on Windows XP .I have downloded
>> > super_all.py and tried to install the plugin by using install
>> Plugin option
>> > menu.
>> > Then I got the message that the plugin was installed but after
>> > re-initialization I dont find the Plugin for the same in Plugin
>> list,also
>> > was unable to run
>> > super command .So will you please help me to solve this
>> problem.Is there
>> > any incompatibility issues for OS XP?
>> > Please help me in solving this problem.Or suggest the proper way
>> of doing
>> > the same as I am new user .
>> >
>> > Pavan
>> >
>> >
>>
>> --
>> *********************************************
>> Jacob Pearson Keller
>> Northwestern University
>> Medical Scientist Training Program
>> email: j-kell...@northwestern.edu
>> <mailto:j-keller2@**northwestern.edu<j-kell...@northwestern.edu>
>> >
>> *********************************************
>>
>
> --
> Thomas Holder
> MPI for Developmental Biology
> Spemannstr. 35
> D-72076 Tübingen
>
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