Dear list, today I realized that if I create a single PDB file of a biological unit (i.e. a tetramer of monomers) the secondary structure information isn't kept. The way I create such a file is:
fetch 2RH2, type=pdb1 split_states 2RH2, delete 2RH2 alter all, segi = model[-4:] rewind save 2RH2_tetra.pdb, all If I open this file the secondary structure of each monomer in the tetramer visualized by "show cartoon" isn't the same as before saving (i.e. beta-sheets length is different etc.). Any ideas why? Thank you very much, Dipl.-Ing. Maximilian Ebert Étudiant au doctorat en biochimie Laboratoire du Dr. Joelle Pelletier Université de Montréal [email protected] ------------------------------------------------------------------------------ Ridiculously easy VDI. With Citrix VDI-in-a-Box, you don't need a complex infrastructure or vast IT resources to deliver seamless, secure access to virtual desktops. With this all-in-one solution, easily deploy virtual desktops for less than the cost of PCs and save 60% on VDI infrastructure costs. Try it free! http://p.sf.net/sfu/Citrix-VDIinabox _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
