Am Dienstag, den 10.01.2012, 23:54 -0800 schrieb John Ladasky: > Hi folks, > > > I just upgraded my Ubuntu Linux installation to 11.10. Of course, > this removes obsolete versions of applications. So I had to reinstall > PyMol. > > > The Ubuntu Linux 11.10 manifest states that PyMol 1.4.1 is the > supported version, and a package file is available. So, I downloaded > and (supposedly) installed PyMol 1.4.1 -- first through Ubuntu > Software Center, and then through Synaptic Package Manager when > Software Center failed (I didn't expect it to to make a difference, > but I tried anyway). > > > > The way in which PyMol is failing is very simple. When I click on the > PyMol icon to start the application, nothing happens. > > > There were no error messages visible in the GUI during the > installation, nor when attempting to start the application. So next > I tried to run PyMol from a terminal prompt, and here I saw errors: > > > 23:29:55 -> pymol > Traceback (most recent call last): > File "<string>", line 1, in <module> > ImportError: No module named pymol > /usr/local/bin/python2.7: No module named pymol > > > This tells me that there's an executable file on my system path named > pymol.py, which starts. Then pymol.py tries to import a module, also > named pymol (why is the name "pymol" used twice?), which fails. > this is coming here: Ubuntu 11.10:
$ pymol
PyMOL(TM) Molecular Graphics System, Version 1.4.1.
Copyright (c) Schrodinger, LLC.
All Rights Reserved.
Created by Warren L. DeLano, Ph.D.
PyMOL is user-supported open-source software. Although some
versions
are freely available, PyMOL is not in the public domain.
If PyMOL is helpful in your work or study, then please volunteer
support for our ongoing efforts to create open and affordable
scientific
software by purchasing a PyMOL Maintenance and/or Support
subscription.
More information can be found at "http://www.pymol.org";.
Enter "help" for a list of commands.
Enter "help <command-name>" for information on a specific command.
Hit ESC anytime to toggle between text and graphics.
I propose to reinstall!
Greetings Bernhard
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