Dear all,
I'm having a tough time using the super command correctly. I want to
superimpose two 5S structures.
In pymol, I'll do the following
load 2awb.pdb
load 3cc2.pdb
create ec-5s, 2awb and chain a
create hm-5s, 3cc2 and chain 9
If I issue *super ec-5s, hm-5s* then the cryptic error "ExecutiveAlign:
invalid selections for alignment. would appear."
Issuing *super /ec-5s//a, /hm-5s//9* does not help either.
What am I missing? *align /ec-5s//a, /hm-5s//9 *works just fine though...
Any help from the community would be very appreciated.
Best,
Quyen
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