Hi James, the selection makes the flexibility:
# Example: non-polar residue carbons remove hydro h_add (resn ILE+LEU+VAL+MET) and (elem C) # Example: polar but not backbone remove hydro h_add (acceptors or donors) and not (name N+O) Also bond order and formal_charge determine where to add a hydrogen. Cheers, Thomas On 01/23/2012 02:50 PM, James Starlight wrote: > Dear PyMol users! > > I have one extra question about addition of the missing Hydrogen atoms > to my structure. > > I've found that I could do it via context Hydrogen command as well as > via H_add command. > > Now I want to add only specific hydrogens to the specific residues of my > proteins ( e.g only alymphatic hydrogens to the non polar residues etc) > > Might It be done in PyMOL? > > Here http://www.pymolwiki.org/index.php/H_Add I've found only very chort > description of the H_add command but I know that this one has some > flexibility. > > Thanks, > > James -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
