Hi James, use the distance command: http://pymolwiki.org/index.php/Distance
For the potential h-bonds, use it with mode=2. Cheers, Thomas On 01/24/2012 05:15 PM, James Starlight wrote: > Dear PyMol Users! > > In the PyMol Wizard I've found very userful option called distance > measurements beyween selected atoms. > > I wounder to know how I could realize such operation via PyMol console > in the simplest manner. > > My current task consist of making different point mutations and > subsiquent quick measurement of the new distance between new mutated > residue and some other native residue. > > In addition I'd like to measure potential H-bond distance between above > residues (polar contacts between electronegative groups) as well as > tight packing forces ( distance between non-polar residues). > > Is there any simplest method for that purpose ? > > Thanks, > > James -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Keep Your Developer Skills Current with LearnDevNow! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-d2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
