Hi Jordan!
Thank you for so detailed explanation Indeed I've noticed that so simple operation is very routine in pymol :( Now I'm looking for good easy-to-use modelling software wich is free for accademical users. I'd like that this soft would have good graphical interphace and flexibility like PyMol as well as good editing functionality like amber XLEAP for instance. By the way as I understood the MOE sotware is not free ( I've not found any download lnks ). So I think use MoDELLER or MAESTRO software for my purposes. Thanks again, James 2012/1/28, Jordan Willis <jwillis0...@gmail.com>: > Is this a one time deal? Or a script you need to make for multiple proteins. > > You could probably transfer the volume by making TLG a new object. create > TLG, protein_1 and resi (residue numbers of TLG). > > Then align TLG to the new protein X where you want it. > > align TLG, proteinX and resi (where you want TLG) > > Then you would have to remove the atoms of the old volume be selecting the > residues and A -> remove atoms > > fuse (N-terminus of protein X atom, C terminus of TLG object) > fuse (N -terminus of TLG, C terminus of protein X) > > That is so time consuming though, why don't you use a modeling program like > everyone else suggested? for a nice graphical interface and bond > satisfaction why not try and use MOE if you want a graphical interface. > http://www.chemcomp.com/software.htm > > If this were me though, I would use Biopython. > > Jordan > > > > > On Jan 28, 2012, at 11:41 PM, James Starlight wrote: > >> Dear PyMol Users! >> >> >> I want to make simple chimeric mutant via PyMol by transferring >> specified group from one protein to another. >> >> >> E.g I have to proteins: >> >> 1 protein consist of triplet of TLG amino acids in the X place >> >> 2nd protein consist of specific group wich I w'd like to move in the X >> place of first protein ( both of that groups have exactly the same >> volume because specific group in second protein was made by >> modification of the TLG triplet ) >> >> How I could do that ransfection ? >> >> James >> >> ------------------------------------------------------------------------------ >> Try before you buy = See our experts in action! >> The most comprehensive online learning library for Microsoft developers >> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, >> Metro Style Apps, more. Free future releases when you subscribe now! >> http://p.sf.net/sfu/learndevnow-dev2 >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > ------------------------------------------------------------------------------ Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
