Probably because they set diffently the acceptor-donor cutoff and the
acceptor-hydrogen-donor angle. Use list_hbonds.py from:
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/
and set the cutoff and angle to the values you wish.
Thomas
On 30 January 2012 16:34, Abhinav Verma <abhinav1...@gmail.com> wrote:
> Hi,
>
> I am trying to get the list of hbonds formed using
> Apply-find-polarcontacts.
>
> I searched and found some scripts, but they never give me the same result
> as the one by default pymol.
>
> Any ideas how I can get the hbonds as a list.
>
> Thanks,
>
> Abhinav
>
>
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--
======================================================================
Thomas Evangelidis
PhD student
Biomedical Research Foundation, Academy of Athens
4 Soranou Ephessiou , 115 27 Athens, Greece
email: tev...@bioacademy.gr
teva...@gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/
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