Dear Gudrun,

I have no experience with PyMOL on Mac. Maybe this helps:
http://pymolwiki.org/index.php/Mouse_Controls

Deselecting objects does not help, because by default you transform in 
camera space, which affects all objects. What you need is transformation 
in model space, which is achieved by "A > drag" or "A > drag matrix" for 
a particular object.

Here an example to use the command line:
translate [10,0,0], object=axes

Hope that helps.

Cheers,
   Thomas

On 02/27/2012 03:21 PM, Gudrun Lotze wrote:
> Dear Thomas Thank you for your reply. The mouse dragging does not
> work because the Mac starts to move windows in a very beautiful way
> which I never came across. :-) So I used a 2-button mouse. But there
> is still a problem. The dummy atom model and the three axes object
> are always moving together when dragging around. Even when I deselect
> the model, drag the cross, and re-select the model, the model has
> moved as well. May I have to shift the cross within the script?
>
> Kind regards Gudrun
>
> Am 27.02.2012 um 12:50 schrieb Thomas Holder:
>
>> Hi Gudrun,
>>
>> On 02/27/2012 01:36 PM, Gudrun Lotze wrote:
>>> The axes appear, but the screen in pymol is now split into two
>>> sections with the cross covering one part. Is there a chance to
>>> move the cross closer to the model in one screen section? A bit
>>> like shown in picture on page http://pymolwiki.org/index.php/Axes
>>> .
>>
>> You can drag the axes object with the mouse. In the right panel,
>> click on "A>  drag" and then use Shift+MiddleMouseButton to drag
>> it.
>>
>> If you prefer the command line over mouse, you could use translate
>> and rotate commands: http://pymolwiki.org/index.php/Translate
>> http://pymolwiki.org/index.php/Rotate
>>
>> Cheers, Thomas

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen

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