Hi pymolers,
I attempt to send a structure from a program to PyMol, which doesn't work.
After some time I've managed to extract the smallest data making the crash.
So the segfault always happens when I do this:
~/bin/MacPyMOL.app/Contents/MacOS/MacPyMOL -p < incmd
where the incmd file contains solely the test below:
cmd.read_pdbstr("""ATOM 1 N MET A 1 -14.152 0.961 4.712
1.00 1.26 N\nATOM 2 CA MET A 1 -13.296 0.028
3.924 1.00 0.43 C\nATOM 3 C MET A 1 -11.822
0.338 4.193 1.00 0.41 C\nATOM 4 O MET A 1
-11.358 1.432 3.941 1.00 0.68 O\nATOM 5 CB MET A 1
-13.571 0.173 2.426 1.00 1.24 C\nATOM 6 CG MET A
1 -15.046 -0.135 2.144 1.00 1.63 C\nATOM 7 SD
MET A 1 -16.174 1.270 1.982 1.00 2.41 S\nATOM 8
CE MET A 1 -17.702 0.313 1.823 1.00 2.91 C\nATOM
9 N THR A 2 -11.121 -0.642 4.703 1.00 0.23
N\nATOM 10 CA THR A 2 -9.669 -0.447 4.998 1.00 0.19
C\nATOM 11 C THR A 2 -8.861 -1.586 4.373 1.00 0.15
C\nATOM 12 O THR A 2 -9.036 -2.736 4.724 1.00
0.20 O\nATOM 13 CB THR A 2 -9.462 -0.447 6.516
1.00 0.20 C\nATOM 14 OG1 THR A 2 -10.399 0.505
7.010 1.00 0.31 O\nATOM 15 CG2 THR A 2 -8.090
0.103 6.896 1.00 0.23 C\n""","a")
(its just a single line)
I use PyMOL 1.5.0.1 on MacOS. Interestingly, it doesn't crash when the
input line comprises about 5 to 7 atoms. Moreover, Pymol version 1.2r1 also
crashes, but work until appx 20 atoms in a line.
Best,
Tim
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