What's going wrong with this code?
_______CODE_______
from pymol import cmd
def process_line(x):
pdbid,res,chain,num = x.split()
cmd.load(pdbid)
cmd.select("target","(resn %s and chain %s and resi %s)"%(res,chain,num))
cmd.select("zone2","(br. (target expand 9 and not (target expand 4.5)) and not
resn HOH and not HET)"
#cmd.save("%s-%s-%s-%s-zone1.pdb"%(pdbid,res,chain,num),"zone1")
cmd.save("%s-%s-%s-%s-zone2"%(pdbid,res,chain,num),"zone2")
#cmd.print pdbid, "done\n";
cmd.delete(pdbid)
def process_all(filename):
for line in open(filename):
process_line(line)
process_all("try.txt")
_________
try.txt looks like this:
10gs.pdb VWW A 210
11ba.pdb UPA A 125
11bg.pdb U2G A 130
___I am getting this error:
File "/usr/lib/pymodules/python2.6/pymol/parser.py", line 338, in parse
parsing.run_file(path,self.pymol_names,self.pymol_names)
File "/usr/lib/pymodules/python2.6/pymol/parsing.py", line 455, in run_file
execfile(file,global_ns,local_ns)
File "process.py", line 10
cmd.save("%s-%s-%s-%s-zone2"%(pdbid,res,chain,num),"zone2")
^
SyntaxError: invalid syntax
PLEASE HELP!
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