Hi Werner, doing *flexible* alignment of a *single* residue sounds a bit strange. What exactly is your goal? Do you want to superpose the rotamers? That would be:
align seleA and name N+C+CA+CB, seleB Hope that helps. Cheers, Thomas On 03/27/2012 01:06 PM, werner schroedinger wrote: > I have two PDB protein structures and would just like to do flexible > alignment of one residue from structure A to another residue (of the > same type) from structure B which remains fixed. I know pymol can do > rigid alignment but wonder about tools for this purpose of flexible > alignment. -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
