Hi Gudrun,
The quickest way would be to center the camera on your selection/protein:
# create the axes
run axes.py
# put camera center at center of protein geometry
orient 6lys
x = cmd.get_position()
# move the axes
cmd.set_object_ttt("axes", [1, 0, 0, x[0], 0, 1, 0, x[1], 0, 0, 1,
x[2], 0, 0, 0, 1])
Cheers,
-- Jason
On Wed, Mar 28, 2012 at 9:00 AM, Gudrun Lotze <gudrun.lo...@gmx.net> wrote:
> Dear all,
>
> I used the second script from page http://www.pymolwiki.org/index.php/Axes to
> draw those axes.
>
> However they are not plotted within my 6Lys.pdb file, those axes are located
> next to the crystal structure. I honestly don't know whee is the center of
> 6Lys.pdb, but is there a chance to bring 6Lys.pdb and axes.py with regard to
> their centers into one point, please? Basically, the axes.py sits in the
> center of the molecule.
> Is there a defined way to achieve this without random try & fail
> translations, please?
>
> Thank you for your help.
> Kind regards
> Gudrun
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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