I am using pymol to display the surface of inorganic crystals, and have used it successfully in the past for relatively small molecules. I am not trying to display larger surfaces (>1e6 atoms), and now notice a discrepancy between the number of atoms present in and loaded from the source file, and that reported by pymol. I have included an example using a file with 1398146 atoms. VMD loads and displays the same file and reports the correct number of atom entries. However, pymol oddly reports 139814 atoms, not 1398146. However, as far as I can tell, the atoms do *appear* in the graphical display. I've posted some screen captures at
http://i1111.photobucket.com/albums/h464/lokidawg/pymol/cap1.png http://i1111.photobucket.com/albums/h464/lokidawg/pymol/cap2.png to illustrate this. Can anyone guess at the cause of this? I am using version 1.5.0.2, compiled from source (Funtoo Linux x86_64, 3.3.1 kernel, 12012MB RAM). Many thanks //Rolf ------------------------------------------------------------------------------ For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
