Hi Pymol Users,
I was trying to use the findSurfaceResidues.py script listed on PyMOLwiki
(http://www.pymolwiki.org/index.php/FindSurfaceResidues), to find out which
residues which are present on the surface of the protein.
These are the steps I have followed:
1) Made a file called findSurfaceResidues.py [with the code as mentioned on
PyMOlwiki], in my /home/anasuya/Desktop folder.
2) Opened PyMOL from my Desktop folder.
3) In the command line window of PyMOL, I typed in: python
findSurfaceResidues.py
4) Next, as mentioned on the PyMOLwiki page, I typed: findSurface residues
doShow=True
5) And finally I typed : findSurfaceResidues doShow=True, cutoff=2.0
However, I am not able to visualize anything.
On the command line window in PyMOL, I see the following:
PyMOL>python findSurfaceResidues.py
PyMOL>findSurface residues doShow=True
1:findSurface residues doShow=True
PyMOL>findSurfaceResidues doShow=True, cutoff=2.5
2:findSurfaceResidues doShow=True, cutoff=2.5
Please tell me what seems to be wrong with my procedure.
Thanks,
- Anasuya
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