Hi Pymol Users, I was trying to use the findSurfaceResidues.py script listed on PyMOLwiki (http://www.pymolwiki.org/index.php/FindSurfaceResidues), to find out which residues which are present on the surface of the protein.
These are the steps I have followed: 1) Made a file called findSurfaceResidues.py [with the code as mentioned on PyMOlwiki], in my /home/anasuya/Desktop folder. 2) Opened PyMOL from my Desktop folder. 3) In the command line window of PyMOL, I typed in: python findSurfaceResidues.py 4) Next, as mentioned on the PyMOLwiki page, I typed: findSurface residues doShow=True 5) And finally I typed : findSurfaceResidues doShow=True, cutoff=2.0 However, I am not able to visualize anything. On the command line window in PyMOL, I see the following: PyMOL>python findSurfaceResidues.py PyMOL>findSurface residues doShow=True 1:findSurface residues doShow=True PyMOL>findSurfaceResidues doShow=True, cutoff=2.5 2:findSurfaceResidues doShow=True, cutoff=2.5 Please tell me what seems to be wrong with my procedure. Thanks, - Anasuya -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net