Jared, Very cool script -- and beautiful visualizations.
It's good to note that since it's in git-repo the new Plugin Manager can access it (just be sure to install COM and transformations, first). What used to take 3--5 minutes (downloading each script and putting them somewhere after cleaning up the text) now takes just seconds. Great work. Cheers, -- Jason On Fri, Jun 15, 2012 at 1:32 PM, Sampson, Jared <jared.samp...@nyumc.org> wrote: > Hello all - > > I'd like to share with you this script that I recently added (with Troels' > help) to the PyMOL Wiki. > > http://www.pymolwiki.org/index.php/Elbow_angle > > Given a PyMOL object containing an antibody Fab fragment complex, light and > heavy chain IDs for the Fab, and residue numbers for the boundary between > variable and constant domains for each chain, the script will output the > elbow angle of the Fab complex and optionally draw a representation of the > vectors used to calculate it. > > It's under version control in the Pymol-scripts-repo, and any suggestions > and/or fixes are welcome. > > Please note that elbow_angle requires transformations.py by Christoph Gohlke > and com.py by Jason Vertrees, both of which are also available in the > Pymol-scripts-repo. > > Cheers, > Jared > > -- > Jared Sampson > Xiangpeng Kong Lab > NYU Langone Medical Center > 550 First Ave MSB 398 > New York, NY 10016 > 212-263-7898 > http://kong.med.nyu.edu/ > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
