John,
Put this in your ~/.pymolrc:
import pymol
def my_load(file,obj):
cmd.load(file,obj)
preset.ligand_cartoon(obj)
cmd.extend("my_load", my_load)
Then you can load files as,
my_load /path/to/file, object_name
Cheers,
-- Jason
On Wed, Jul 11, 2012 at 12:48 PM, John Amraph <[email protected]> wrote:
> Dear collegues,
>
> I need your help in following question. I want to visualize pdb in the
> preset.ligand_cartoon("all",_self=cmd) mode when Pymol is opening the pdb
> file.
> I tried several options:
>
> include preset.ligand_cartoon("all",_self=cmd) in pymolrc
> making a pymol script(from pymol import cmd\
> preset.ligand_cartoon("all",_self=cmd)) and adding run script.py in pymolrc
>
> But that doesn't work.
>
> Thank you!
> John Amraph
>
> PS: OS - Win7, pymol v0.9
>
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC
(e) [email protected]
(o) +1 (603) 374-7120
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Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
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