Troels, It would be nice if publishers required a common CSV format for specifying contacts and annotations. Then we could easily pull the data from reliable resources. But, alas, this doesn't exist.
Cheers, -- Jason On Fri, Jul 13, 2012 at 5:41 AM, Troels Emtekær Linnet <tlin...@gmail.com> wrote: > Dear PyMolers. > > Reading crystallographic papers, and feeling the > need for seing a papers annotation and explanation of important residues, > I often have pymol at my hand. > > fetching the protein, and typing in commands to see the mentioned residues. > That is time-consuming, but okay. > > Inspired by John Amraph's need for a "preset.ligand_cartoon", when loadning > a paper, I would wish there were a: "preset.as_article" or a "fetch 1SVN, > as_article". > > Simply a pymol script file that fetch the protein, shows it as cartoon, and > selecting/labelling/showing the > mentioned important residues in the article. Or the catalytic triad, the > substrate channels... etc. > You get the point. :-) > > So, does anyone know there already exist such a databank/annotation server? > If it exist, could one make a script that can fetch and convert these > annotations to a pymol script? > Or if doesnt exist, would it be a interesting project to pursue? > > Best > Troels Emtekær Linnet > PhD student > SBiNLab, Copenhagen University > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
