By the way I've already tried to make such thing ussing create command
e.g create test, sele, 1, 1 # (this should produce merged chains in 1 object) wheere sele is the selection of all atoms from both proteins. In that case resulted test.pdb consisted of wrong secondary structure. Also atom number in the sequence was mixed ( e.g like abababababababab,, where I need to obtain sequenctial order aaaaaaaabbbbbbbb ). What I've done wrong and how I could obtain desired sequence ? James 2012/8/14, James Starlight <jmsstarli...@gmail.com>: > Dear PyMol users! > > I want to create chimeric protein (merge the N term of the second > protein to the C term of the first protein) from two initial pdb's. > How I could do this for further processing of that chimeric protein > for MD simulation ? > > > Thanks for help, > > > James > ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
